- 1. Xcalibur
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Thermo. Windows application to control the instrument and basic data processing. Plays well with Sequest and TPP
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標簽：Raw Data
- 2. Bioworks
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Thermo. Based on Xcalibur. More advanced data processing. New version is called ProteomeDiscoverer.
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標簽：Raw Data
- 3. Analyst.
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ABI
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標簽：Raw Data
- 4. MassLynx.
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Waters
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標簽：Raw Data
- 5. MassHunter.
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Agilent
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標簽：Raw Data
- 6. DataAnalysis.
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Bruker
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標簽：Raw Data
- 7. ProteomeDiscoverer
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Thermo. New version of Bioworks
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標簽：Raw Data
- 8. X2XML
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converts different RAW files to mzXML
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標簽：Raw Data / Conversion
